Lectures

Introduction to light microscopy

Sunday, 21 February 2021

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Introduction to image analysis I

Tuesday, 22 February 2022

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Introduction to image analysis I

Tuesday, 22 February 2022

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Introduction to image analysis II

Wednesday, 23 February 2022

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Introduction to microfluidics

Friday, 25 February 2022

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How to run microfluidics experiments

Friday, 25 February 2022

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Homework

Homework I

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Homework II

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Project work and presentations

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Analyze microfluidics experiments

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Talks

Scientific talk

Tuesday, 23 February 2021

Robert Schneider, director of the Institute of Functional Epigenetics will give a talk about their ongoing research.

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Scientific talk

Friday, 26 February 2021

Maria Elena Torres-Padilla, director of the Institute of Epigenetics and Stem Cells will give a talk about their ongoing research.

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Scientific talk

Monday, 01 March 2021

Kurt Schmoller, group leader at the Institute of Functional Epigenetics will give a talk about their ongoing research.

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Literature

A dive into super-resolution microscopy for beginners in the technique.

Error bars in experimental biology

About the (mis)use of error bars in biology.

A practical guide to evaluating colocalization in biological microscopy

A practical summary of co-localization analysis approaches.

Getting started with Fiji

Tutorial for getting started with image analysis in ImageJ/Fiji.

Image segmentation in Fiji

Tutorial for threshold-based image segmentation with ImageJ.

Co-localization analysis with Fiji

Tutorial for getting started with co-localization analysis in Fiji.

ImageJ macro language

Getting started with Fiji macro programming.

Interactive R plotting

Interactive plotting with R.

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Interactive

Fiji exercises

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Slack and Team working

Slack

We set up a Slack channel for the course. Here you can:

Please do

Team working

For the project work, you will work in teams. Use your own favorite channels of online communication and make use of the Slack channel to chat with your colleagues. On Friday, you will have time to finish your image analysis pipelines and analyze and plot the data. Each team should then present their results on Monday morning in a short (5-10 slides) presentation.

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Schedule

2021/22 Course schedule

Timetable for the course.

Download as PDF

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